@Book{BioNLP:2010, editor = {K. Bretonnel Cohen and Dina Demner-Fushman and Sophia Ananiadou and John Pestian and Jun'ichi Tsujii and Bonnie Webber}, title = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, url = {http://www.aclweb.org/anthology/W10-19} } @InProceedings{vlachos:2010:BioNLP, author = {Vlachos, Andreas}, title = {Two Strong Baselines for the BioNLP 2009 Event Extraction Task}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {1--9}, url = {http://www.aclweb.org/anthology/W10-1901} } @InProceedings{liu-huang-zhu:2010:BioNLP, author = {Liu, Jingchen and Huang, Minlie and Zhu, Xiaoyan}, title = {Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {10--18}, url = {http://www.aclweb.org/anthology/W10-1902} } @InProceedings{ohta-EtAl:2010:BioNLP, author = {Ohta, Tomoko and Pyysalo, Sampo and Miwa, Makoto and Kim, Jin-Dong and Tsujii, Jun'ichi}, title = {Event Extraction for Post-Translational Modifications}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {19--27}, url = {http://www.aclweb.org/anthology/W10-1903} } @InProceedings{bjorne-EtAl:2010:BioNLP, author = {Bj\"{o}rne, Jari and Ginter, Filip and Pyysalo, Sampo and Tsujii, Jun'ichi and Salakoski, Tapio}, title = {Scaling up Biomedical Event Extraction to the Entire PubMed}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {28--36}, url = {http://www.aclweb.org/anthology/W10-1904} } @InProceedings{miwa-EtAl:2010:BioNLP, author = {Miwa, Makoto and Pyysalo, Sampo and Hara, Tadayoshi and Tsujii, Jun'ichi}, title = {A Comparative Study of Syntactic Parsers for Event Extraction}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {37--45}, url = {http://www.aclweb.org/anthology/W10-1905} } @InProceedings{kilicoglu-EtAl:2010:BioNLP, author = {Kilicoglu, Halil and Fiszman, Marcelo and Rosemblat, Graciela and Marimpietri, Sean and Rindflesch, Thomas}, title = {Arguments of Nominals in Semantic Interpretation of Biomedical Text}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {46--54}, url = {http://www.aclweb.org/anthology/W10-1906} } @InProceedings{plaza-stevenson-diaz:2010:BioNLP, author = {Plaza, Laura and Stevenson, Mark and D\'{i}az, Alberto}, title = {Improving Summarization of Biomedical Documents Using Word Sense Disambiguation}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {55--63}, url = {http://www.aclweb.org/anthology/W10-1907} } @InProceedings{jha-elhadad:2010:BioNLP, author = {Jha, Mukund and Elhadad, Noemie}, title = {Cancer Stage Prediction Based on Patient Online Discourse}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {64--71}, url = {http://www.aclweb.org/anthology/W10-1908} } @InProceedings{gerner-nenadic-bergman:2010:BioNLP, author = {Gerner, Martin and Nenadic, Goran and Bergman, Casey M.}, title = {An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {72--80}, url = {http://www.aclweb.org/anthology/W10-1909} } @InProceedings{apostolova-tomuro:2010:BioNLP, author = {Apostolova, Emilia and Tomuro, Noriko}, title = {Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {81--82}, url = {http://www.aclweb.org/anthology/W10-1910} } @InProceedings{chowdhury-lavelli:2010:BioNLP, author = {Chowdhury, Md. Faisal Mahbub and Lavelli, Alberto}, title = {Disease Mention Recognition with Specific Features}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {83--90}, url = {http://www.aclweb.org/anthology/W10-1911} } @InProceedings{frunza-inkpen:2010:BioNLP, author = {Frunza, Oana and Inkpen, Diana}, title = {Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {91--98}, url = {http://www.aclweb.org/anthology/W10-1912} } @InProceedings{guo-EtAl:2010:BioNLP, author = {Guo, Yufan and Korhonen, Anna and Liakata, Maria and Silins, Ilona and Sun, Lin and Stenius, Ulla}, title = {Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {99--107}, url = {http://www.aclweb.org/anthology/W10-1913} } @InProceedings{heimonen-bjorne-salakoski:2010:BioNLP, author = {Heimonen, Juho and Bj\"{o}rne, Jari and Salakoski, Tapio}, title = {Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {108--116}, url = {http://www.aclweb.org/anthology/W10-1914} } @InProceedings{leaman-EtAl:2010:BioNLP, author = {Leaman, Robert and Wojtulewicz, Laura and Sullivan, Ryan and Skariah, Annie and Yang, Jian and Gonzalez, Graciela}, title = {Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {117--125}, url = {http://www.aclweb.org/anthology/W10-1915} } @InProceedings{morante:2010:BioNLP, author = {Morante, Roser}, title = {Semantic Role Labeling of Gene Regulation Events: Preliminary Results}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {126--127}, url = {http://www.aclweb.org/anthology/W10-1916} } @InProceedings{naderi-witte:2010:BioNLP, author = {Naderi, Nona and Witte, Ren\'{e}}, title = {Ontology-Based Extraction and Summarization of Protein Mutation Impact Information}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {128--129}, url = {http://www.aclweb.org/anthology/W10-1917} } @InProceedings{park-choi:2010:BioNLP, author = {Park, Heekyong and Choi, Jinwook}, title = {Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {130--131}, url = {http://www.aclweb.org/anthology/W10-1918} } @InProceedings{pyysalo-EtAl:2010:BioNLP, author = {Pyysalo, Sampo and Ohta, Tomoko and Cho, Han-Cheol and Sullivan, Dan and Mao, Chunhong and Sobral, Bruno and Tsujii, Jun'ichi and Ananiadou, Sophia}, title = {Towards Event Extraction from Full Texts on Infectious Diseases}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {132--140}, url = {http://www.aclweb.org/anthology/W10-1919} } @InProceedings{stubbs-harshfield:2010:BioNLP, author = {Stubbs, Amber and Harshfield, Benjamin}, title = {Applying the TARSQI Toolkit to Augment Text Mining of EHRs}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {141--143}, url = {http://www.aclweb.org/anthology/W10-1920} } @InProceedings{vanlandeghem-EtAl:2010:BioNLP, author = {Van Landeghem, Sofie and Pyysalo, Sampo and Ohta, Tomoko and Van de Peer, Yves}, title = {Integration of Static Relations to Enhance Event Extraction from Text}, booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing}, month = {July}, year = {2010}, address = {Uppsala, Sweden}, publisher = {Association for Computational Linguistics}, pages = {144--152}, url = {http://www.aclweb.org/anthology/W10-1921} }