| ACL 2010 CD | WORKSHOP ON CD | ACL 2010 ONLINE | ACL ONLINE |
WORKSHOP PROGRAM
Thursday, July 15, 2010 | |
| 9:00–9:15 | Opening Remarks |
| Session 1: Extraction | |
| 9:15–9:40 | Two Strong Baselines for the BioNLP 2009 Event Extraction Task Andreas Vlachos |
| 9:40–10:05 | Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields Jingchen Liu, Minlie Huang and Xiaoyan Zhu |
| 10:05–10:30 | Event Extraction for Post-Translational Modifications Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim and Jun’ichi Tsujii |
| 10:30–11:00 | Morning coffee break |
| Session 2 | |
| 11:–12:00 | Keynote speaker, W. John Wilbur: Text Mining and Intelligence |
| 12:05–12:30 | Scaling up Biomedical Event Extraction to the Entire PubMed Jari Björne, Filip Ginter, Sampo Pyysalo, Jun’ichi Tsujii and Tapio Salakoski |
| 12:30–14:00 | Lunch break |
| Session 3: Foundations | |
| 14:00–14:25 | A Comparative Study of Syntactic Parsers for Event Extraction Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara and Jun’ichi Tsujii |
| 14:25–14:50 | Arguments of Nominals in Semantic Interpretation of Biomedical Text Halil Kilicoglu, Marcelo Fiszman, Graciela Rosemblat, Sean Marimpietri and Thomas Rindflesch |
| Session 4: High-level tasks | |
| 14:50–15:15 | Improving Summarization of Biomedical Documents Using Word Sense Disambiguation Laura Plaza, Mark Stevenson and Alberto Díaz |
| 15:30–16:00 | Afternoon coffee break |
| Session 4: High-level tasks, continued | |
| 16:00–16:25 | Cancer Stage Prediction Based on Patient Online Discourse Mukund Jha and Noemie Elhadad |
| 16:25–16:50 | An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text Martin Gerner, Goran Nenadic and Casey M. Bergman |
| 16:50–17:00 | Poster Boaster session and Conclusions |
| 17:00–17:30 | Poster session |
| 17:00–17:30 | Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts Emilia Apostolova and Noriko Tomuro |
| 17:00–17:30 | Disease Mention Recognition with Specific Features Md. Faisal Mahbub Chowdhury and Alberto Lavelli |
| 17:00–17:30 | Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences Oana Frunza and Diana Inkpen |
| 17:00–17:30 | Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes Yufan Guo, Anna Korhonen, Maria Liakata, Ilona Silins, Lin Sun and Ulla Stenius |
| 17:00–17:30 | Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain Juho Heimonen, Jari Björne and Tapio Salakoski |
| 17:00–17:30 | Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks Robert Leaman, Laura Wojtulewicz, Ryan Sullivan, Annie Skariah, Jian Yang and Graciela Gonzalez |
| 17:00–17:30 | Semantic Role Labeling of Gene Regulation Events: Preliminary Results Roser Morante |
| 17:00–17:30 | Ontology-Based Extraction and Summarization of Protein Mutation Impact Information Nona Naderi and René Witte |
| 17:00–17:30 | Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents Heekyong Park and Jinwook Choi |
| 17:00–17:30 | Towards Event Extraction from Full Texts on Infectious Diseases Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Dan Sullivan, Chunhong Mao, Bruno Sobral, Jun’ichi Tsujii and Sophia Ananiadou |
| 17:00–17:30 | Applying the TARSQI Toolkit to Augment Text Mining of EHRs Amber Stubbs and Benjamin Harshfield |
| 17:00–17:30 | Integration of Static Relations to Enhance Event Extraction from Text Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta and Yves Van de Peer |