ACL 2010 CD | WORKSHOP ONLINE | ACL 2010 ONLINE | ACL ONLINE

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing

Chairs
K. Bretonnel Cohen (University of Colorado School of Medicine), USA
Dina Demner-Fushman (US National Library of Medicine), USA
Sophia Ananiadou (University of Manchester), UK
John Pestian (Cincinnati Children’s Hospital Medical Center), USA
Jun’ichi Tsujii (University of Tokyo and University of Manchester), Japan and UK
Bonnie Webber(University of Edinburgh), UK

Full proceedings volume (PDF)
Schedule and author index (HTML)
Bibliography (BibTeX)
Live website


pdf bib Front matter pages
pdf bib Two Strong Baselines for the BioNLP 2009 Event Extraction Task
Andreas Vlachos 		pp. 1–9
pdf bib Recognizing Biomedical Named Entities Using Skip-Chain Conditional Random Fields
Jingchen Liu, Minlie Huang and Xiaoyan Zhu 		pp. 10–18
pdf bib Event Extraction for Post-Translational Modifications
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim and Jun’ichi Tsujii 		pp. 19–27
pdf bib Scaling up Biomedical Event Extraction to the Entire PubMed
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun’ichi Tsujii and Tapio Salakoski 		pp. 28–36
pdf bib A Comparative Study of Syntactic Parsers for Event Extraction
Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara and Jun’ichi Tsujii 		pp. 37–45
pdf bib Arguments of Nominals in Semantic Interpretation of Biomedical Text
Halil Kilicoglu, Marcelo Fiszman, Graciela Rosemblat, Sean Marimpietri and Thomas Rindflesch 		pp. 46–54
pdf bib Improving Summarization of Biomedical Documents Using Word Sense Disambiguation
Laura Plaza, Mark Stevenson and Alberto Díaz 		pp. 55–63
pdf bib Cancer Stage Prediction Based on Patient Online Discourse
Mukund Jha and Noemie Elhadad 		pp. 64–71
pdf bib An Exploration of Mining Gene Expression Mentions and Their Anatomical Locations from Biomedical Text
Martin Gerner, Goran Nenadic and Casey M. Bergman 		pp. 72–80
pdf bib Exploring Surface-Level Heuristics for Negation and Speculation Discovery in Clinical Texts
Emilia Apostolova and Noriko Tomuro 		pp. 81–82
pdf bib Disease Mention Recognition with Specific Features
Md. Faisal Mahbub Chowdhury and Alberto Lavelli 		pp. 83–90
pdf bib Extraction of Disease-Treatment Semantic Relations from Biomedical Sentences
Oana Frunza and Diana Inkpen 		pp. 91–98
pdf bib Identifying the Information Structure of Scientific Abstracts: An Investigation of Three Different Schemes
Yufan Guo, Anna Korhonen, Maria Liakata, Ilona Silins, Lin Sun and Ulla Stenius 		pp. 99–107
pdf bib Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain
Juho Heimonen, Jari Björne and Tapio Salakoski 		pp. 108–116
pdf bib Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks
Robert Leaman, Laura Wojtulewicz, Ryan Sullivan, Annie Skariah, Jian Yang and Graciela Gonzalez 		pp. 117–125
pdf bib Semantic Role Labeling of Gene Regulation Events: Preliminary Results
Roser Morante 		pp. 126–127
pdf bib Ontology-Based Extraction and Summarization of Protein Mutation Impact Information
Nona Naderi and René Witte 		pp. 128–129
pdf bib Extracting Distinctive Features of Swine (H1N1) Flu through Data Mining Clinical Documents
Heekyong Park and Jinwook Choi 		pp. 130–131
pdf bib Towards Event Extraction from Full Texts on Infectious Diseases
Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Dan Sullivan, Chunhong Mao, Bruno Sobral, Jun’ichi Tsujii and Sophia Ananiadou 		pp. 132–140
pdf bib Applying the TARSQI Toolkit to Augment Text Mining of EHRs
Amber Stubbs and Benjamin Harshfield 		pp. 141–143
pdf bib Integration of Static Relations to Enhance Event Extraction from Text
Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta and Yves Van de Peer 		pp. 144–152

Last modified on June 16, 2010, 4:37 p.m.